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View Structure Prediction Details

Protein: gi|11358053, gi|...
Organism: Arabidopsis thaliana
Length: 491 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11358053, gi|....

Description E-value Query
Range
Subject
Range
gi|47225188 - gi|47225188|emb|CAF98815.1| unnamed protein product [Tetraodon nigroviridis]
474.0 [0..3] [491..28]
gi|77549704, gi|... - gi|77549704|gb|ABA92501.1| diphthamide biosynthesis protein 2 containing protein, expressed [Oryza s...
473.0 [0..1] [491..1]
DPH2_XENLA - Diphthamide biosynthesis protein 2 OS=Xenopus laevis GN=dph2 PE=2 SV=1
473.0 [0..2] [491..30]
gi|115712687, gi... - gi|115923998|ref|XP_001181978.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus], gi...
467.0 [0..4] [491..29]
DPH1_MOUSE - Diphthamide biosynthesis protein 1 OS=Mus musculus GN=Dph1 PE=1 SV=1
gi|157169770 - gi|157169770|gb|AAI52730.1| DPH1 homolog (S. cerevisiae) [synthetic construct]
456.0 [0..6] [430..52]
DPH1 - DPH1 homolog (S. cerevisiae)
451.0 [0..6] [430..57]
gi|114665638 - gi|114665638|ref|XP_511255.2| PREDICTED: diptheria toxin resistance protein required for diphthamide...
451.0 [0..6] [430..57]
DPH2_CHICK - Diphthamide biosynthesis protein 2 OS=Gallus gallus GN=DPH2 PE=2 SV=1
450.0 [0..4] [491..27]

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Predicted Domain #1
Region A:
Residues: [1-134]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELEFESKYE INRTAEFIIS KSFTRIALQF PDELLKDSTK VVSALKSKTR LLTDREVRFF  60
   61 VMADTTYGSC CIDEVGALHI DSECVVHYGQ TCLSPTSVLP AFFVFGKASI NVSSCVKHLI 120
  121 DYASKSDKPI MILY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [135-225]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLEYAHVIPQ IREELGLSKT DSQLSVANVL CSFISPSKDP RESMEHPRPY SESDSSDSLS  60
   61 SSRSYRLGGL TWDLPEGSKI EDYLLFWIGS D

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [226-388]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSAFANVVLT FNGCDIVRYD AEEDSLVTEF YQQRRILKRR YYLVEKAKDA NIIGILVGTL  60
   61 GVAGYLHMIH HMQALISAAG KKSYILAMGR PNPAKLANFP ECDVFIYISC AQTALLDSKE 120
  121 FMSPVITPFE ANLAFSRGSE WTGAYLMHFQ DVINSVKSES EAH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [389-491]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IGSEEPRFSF FQGGYVEDHK TNDQAKNGEE DTGETMTLVQ AAEKALQLRG NDHNSLTKQT  60
   61 AAKSGPEYFL NRVYRGLEIN SENTLPEPYI VGRSGKASGY KHE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
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