YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: RIC10_ARATH
Organism: Arabidopsis thaliana
Length: 156 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RIC10_ARATH.

Description E-value Query
Range
Subject
Range
gi|2459428, gi|2... - pir||G84745 hypothetical protein At2g33460 [imported] - Arabidopsis thaliana, gi|2459428|gb|AAB80663...
151.0 [0..1] [153..1]

Back

Predicted Domain #1
Region A:
Residues: [1-89]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMKMKGIYK GFKCISQIFA VEKERDEIEI GFPTDVKHVA HIGWEGSSGS APGWMSEFKV  60
   61 GAELLSPRPS SFSNARPSTS FFTSSSSTD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.154902
Match: 1ej5A
Description: Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [90-156]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FDQGSSQRGI SDTLRDIPPV TPINLPKNNK KKSSRRKKSS SSSSSPKSSR SSVLSKSSYK  60
   61 STVSRLI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle