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View Structure Prediction Details

Protein: PP265_ARATH
Organism: Arabidopsis thaliana
Length: 657 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PP265_ARATH.

Description E-value Query
Range
Subject
Range
gi|54695180 - gi|54695180|dbj|BAD67155.1| PPR986-12 [Physcomitrella patens]
679.0 [0..2] [657..335]

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Predicted Domain #1
Region A:
Residues: [1-657]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLSHPPQVI QPTYHTVNFL PRSPLKPPSC SVALNNPSIS SGAGAKISNN QLIQSLCKEG  60
   61 KLKQAIRVLS QESSPSQQTY ELLILCCGHR SSLSDALRVH RHILDNGSDQ DPFLATKLIG 120
  121 MYSDLGSVDY ARKVFDKTRK RTIYVWNALF RALTLAGHGE EVLGLYWKMN RIGVESDRFT 180
  181 YTYVLKACVA SECTVNHLMK GKEIHAHLTR RGYSSHVYIM TTLVDMYARF GCVDYASYVF 240
  241 GGMPVRNVVS WSAMIACYAK NGKAFEALRT FREMMRETKD SSPNSVTMVS VLQACASLAA 300
  301 LEQGKLIHGY ILRRGLDSIL PVISALVTMY GRCGKLEVGQ RVFDRMHDRD VVSWNSLISS 360
  361 YGVHGYGKKA IQIFEEMLAN GASPTPVTFV SVLGACSHEG LVEEGKRLFE TMWRDHGIKP 420
  421 QIEHYACMVD LLGRANRLDE AAKMVQDMRT EPGPKVWGSL LGSCRIHGNV ELAERASRRL 480
  481 FALEPKNAGN YVLLADIYAE AQMWDEVKRV KKLLEHRGLQ KLPGRCWMEV RRKMYSFVSV 540
  541 DEFNPLMEQI HAFLVKLAED MKEKGYIPQT KGVLYELETE EKERIVLGHS EKLALAFGLI 600
  601 NTSKGEPIRI TKNLRLCEDC HLFTKFISKF MEKEILVRDV NRFHRFKNGV CSCGDYW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.0
Match: 1xi4A
Description: Clathrin D6 Coat
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle