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View Structure Prediction Details

Protein: ROGFC_ARATH
Organism: Arabidopsis thaliana
Length: 515 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ROGFC_ARATH.

Description E-value Query
Range
Subject
Range
ROGFB_ARATH - Rop guanine nucleotide exchange factor 11 OS=Arabidopsis thaliana GN=ROPGEF11 PE=1 SV=1
767.0 [0..6] [515..2]

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Predicted Domain #1
Region A:
Residues: [1-82]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRASEQEQE TYRSRLFNFK WRNNDNNSAT RHNKSLSVET GLDEAATGSH DAEPLTIIHP  60
   61 SQGPPLSRSA ADEAVLAALA AS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [83-515]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QARERQLLAD MEQMKERFSK LLLGEDNSGG GKGVSSALAL SNAITNLAAS VFGEQRRLEP  60
   61 MPAERRARWR KEIDWLLSVT DYVVEFAPSQ QKNKDGTNME IMTTRQRTDL HMNIPALKKL 120
  121 DAMLIDCLEN FKDQSEFSYI SKDSPDLDGK RNDEKWWIPT VKVPPDGLSE ASRRFLQYQK 180
  181 DCVNQVLKAA MAINAQVLFE MEIPESYIDS LPKNGRASLG DQMYKNITVD FFDPDQFLSS 240
  241 MDMSSEHKIV DLKNRIEASI IIWKRKMVYK DNKSSAPWAS GVSLEKREVF EERAETILLI 300
  301 LKQRYPGISQ SSLDISKIQF NEDVGQAVLE SYSRILESLA YTVLSRIDDV LEADRAGNKR 360
  361 NTPLEAEEET LVGSMTLSDF MGWDFDQAAN AELESKKDLP DDPLIKEKLS VVTTKKTSYL 420
  421 ETLGGVKSPT ARH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 2ntxA
Description: No description for 2ntxA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle