YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7270047, gi\|1...
Organism:	Arabidopsis thaliana
Length:	379 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7270047, gi|1....

Description	E-value	Query Range	Subject Range
gi\|186502775, gi... - gi\|61742608\|gb\|AAX55125.1\| hypothetical protein At2g24530 [Arabidopsis thaliana], gi\|186502775\|ref\|N...	421.0	[0..1]	[377..1]
gi\|113565698, gi... - gi\|115461054\|ref\|NP_001054127.1\| Os04g0658100 [Oryza sativa (japonica cultivar-group)], gi\|113565698...	343.0	[0..8]	[377..36]
gi\|116310846, gi... - gi\|125550060\|gb\|EAY95882.1\| hypothetical protein OsI_17748 [Oryza sativa Indica Group], gi\|116310846...	342.0	[0..8]	[377..34]
gi\|67900922, gi\|... - gi\|67900922\|ref\|XP_680717.1\| hypothetical protein AN7448.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	312.0	[0..4]	[376..1585]
gi\|159129144 - gi\|159129144\|gb\|EDP54258.1\| transcriptional co-activator (Hfi1/Ada1), putative [Aspergillus fumigatu... gi\|70989771, gi\|... - gi\|70989771\|ref\|XP_749735.1\| transcriptional co-activator (Hfi1/Ada1) [Aspergillus fumigatus Af293],...	311.0	[0..4]	[376..39]
gi\|169769486 - gi\|169769486\|ref\|XP_001819213.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83767071 - gi\|83767071\|dbj\|BAE57211.1\| unnamed protein product [Aspergillus oryzae]	310.0	[0..4]	[376..39]
gi\|102139849 - gi\|102139849\|gb\|ABF70007.1\| hypothetical protein MA4_8L21.20 [Musa acuminata]	299.0	[0..5]	[375..6]
gi\|115400779, gi... - gi\|115400779\|ref\|XP_001215978.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	299.0	[0..4]	[376..39]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRLQDPRID LAELKVHIVK KVGVERSTRY FYYLGRFLSQ KLTKSEFDKS CFRLLGRENL  60
   61 SLHNKLIRSI LRNASLAKSP PSVHQSGHPG KSLVLGKEDG PE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.891	N/A	N/A	a.188.1	Description not found.

Predicted Domain #2

Region A:
Residues: [103-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESRSLNPDHI RNDLALSNGV LAKVRPGTCD DRTIRDKPCP LGSNGKVLGP FAYSRPGRYP  60
   61 DERDSAFLCP AEQKAVSGKD QVAAP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [188-379]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISRDDEAQVR ILSTPPVMAP LGIPFCSASV GGDRRTVPVS TSAAAISCYD SGGLSDTEML  60
   61 RKRMENIAVT QGLGGVSAEC SIVLNNMLDL YLKKLMKSCV DLAGARSMNG TPGKHSLEKQ 120
  121 QSRDELVNGV RTNNSFHIQT SNQPSDITRE QHSVSLLDFR VAMELNPHQL GEDWPLLRER 180
  181 ISISLFEERE GV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits