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View Structure Prediction Details

Protein: gi|11280530, gi|...
Organism: Arabidopsis thaliana
Length: 875 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11280530, gi|....

Description E-value Query
Range
Subject
Range
NP93A_ARATH - Nuclear pore complex protein NUP93A OS=Arabidopsis thaliana GN=NUP93A PE=1 SV=2
1061.0 [0..1] [875..1]

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Predicted Domain #1
Region A:
Residues: [1-180]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANDQEMSGW TDLLHSSTKL LEQAAPSSQF PPLQVLLLTT TLFDFEPPNL DQLEALSRKL  60
   61 KAKTLRNEAP SQSIAATRLL AREGINADQL SRDLKSFELK TTFEDVFPAE TTSVEEYLQQ 120
  121 VHEMAMVSAI QEAQKDNVRS FNNYMLKVLE EDCIKEKRDF LHSLSKTSML PKTKMINSSR 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [181-875]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSHAGSLVPL SPQVSSKPGT ELVSMTNKPI HEKKAYVYAE VVKKLNSARE RGLPFKLATL  60
   61 FNGAYESLEI DLTRGKSVNM QKLWQLIQGM TGEESAVQHG VSKRMALVIG ARRHLECGHG 120
  121 KHIMDTIKSH PTQAALGGSV GNLQRIRAFL RIRLRDYGSL DFDSVDARRQ PPVDTTWQQE 180
  181 AREIAQSSRS SQQQFAPLLT EWITTGGTVA AQTAATASEE CEKLLRMGDR FGQTTYDKKK 240
  241 LLLYTIISGS RRQIDRIMRD FSTLFNTIED FLWFKLSCVR DVAGGSSSMI VNDGLVPYSL 300
  301 DDLQAYLNKF EPSYYTKNGK DPLVYPYVLL LSIQLLPAIM HMSNEAGDEG YNIDAVHVAI 360
  361 SLVDHSILSE GSGTGRKLSV MDANAEASSM IRQYGSMYLH HGDLQMTLEY YAQAAIAVGG 420
  421 GQQAWSGRSN VDQQRQRNLM LKQLLTEILS QEDGIHFLLG ARGSGEEGEL GRFLPDIKLR 480
  481 QQFLIEAAHQ FQEAGLYDKS IELQKRVGAF SSALETINKC LSEAICSLVR GRPDGESRTE 540
  541 GLVLSGNDIL NSYKYHPDVR EVLTGSVILL YYSAQERHLV MEQETILREL EAILSIHKLA 600
  601 RLNKHLDAIR EVAKLPFLHL DPRQPDTTSD EFQKASSYFQ TCVPDLLKVA LTCLDNVADT 660
  661 DGSIRGMRSK IAGFLASNTQ RNWPRDLYEK IARSF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 153.0
Match: 2qx5A
Description: No description for 2qx5A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle