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View Structure Prediction Details

Protein: P2C66_ARATH
Organism: Arabidopsis thaliana
Length: 674 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for P2C66_ARATH.

Description E-value Query
Range
Subject
Range
gi|21537109 - gi|21537109|gb|AAM61450.1| unknown [Arabidopsis thaliana]
440.0 [0..1] [674..1]

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Predicted Domain #1
Region A:
Residues: [1-194]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNGVTTLTG CCTGTLAGEI SRRYDVSLVH DGLGHSFCYI RPDLPGVVLP SPESPLRSDH  60
   61 IQETTFRSIS GASVSANPST ALSGALSSDS DCPYSSAVSA SAFESSGNFA SLPLQPVPRG 120
  121 STWQSGPIVN ESGLGSAPFE RRFLSGPIES GLYSGPIEST KKTEKEKPKK IRKKPKSKKN 180
  181 FLTFKTLFAN LISN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [195-674]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNKPRLKKSV IEPINGSDSS DSGRLHHEPV ITSSRSNENP KSDLEEEDEK QSMNSVLDVQ  60
   61 WAQGKAGEDR VHVVVSEDNG WVFVGIYDGF SGPDAPDYLL NNLYTAVQKE LNGLLWNDEK 120
  121 LRSLGENGMT KTGKCSDEED PESGKENCPV INNDDAVASG ARNQAKSLKW RCEWEKKSNN 180
  181 KTKSDNRCDQ KGSNSTTTNH KDVLKALLQA LRKTEDAYLE LADQMVKENP ELALMGSCVL 240
  241 VTLMKGEDVY VMNVGDSRAV LGRKPNLATG RKRQKELERI REDSSLEDKE ILMNGAMRNT 300
  301 LVPLQLNMEH STRIEEEVRR IKKEHPDDDC AVENDRVKGY LKVTRAFGAG FLKQPKWNDA 360
  361 LLEMFRIDYI GTSPYITCSP SLCHHKLTSR DKFLILSSDG LYEYFSNQEA IFEVESFISA 420
  421 FPEGDPAQHL IQEVLLRAAN KFGMDFHELL EIPQGDRRRY HDDVSVIVIS LEGRIWRSSM 480
  481 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 58.09691
Match: 2pnqA
Description: No description for 2pnqA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle