YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: FK171_ARATH
Organism: Arabidopsis thaliana
Length: 229 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FK171_ARATH.

Description E-value Query
Range
Subject
Range
gi|33861849, gi|... - gi|33861849|ref|NP_893410.1| FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase) [Prochlorococcus...
137.0 [0..15] [224..5]

Back

Predicted Domain #1
Region A:
Residues: [1-229]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRCFAWTPL VGAPLITTVH FTSPPSLRIF ASRSSAPSSS SSSSSTVAAA SRRSISLSII  60
   61 AVTSSVVSSF CFSSPALADF SEIPNSGGVK ALDLRIGDGD VPIEGDQIEI HYYGRLAAKQ 120
  121 GWRFDSTYDH KDSNGEAVPF TFVLGSSKVI PGIETAVRSM KVGGIRRVVI PPSQGYQNTS 180
  181 QEPLPPNFFD RQRLFTTIFN PTRLANGEGS TLGTLVFDIE LVSTRRLHR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.221849
Match: 1fd9A
Description: Macrophage infectivity potentiator protein (MIP)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.355223926248969 bayes_pls_golite062009
isomerase activity 0.11136303327967 bayes_pls_golite062009
cis-trans isomerase activity 0.0710660189922594 bayes_pls_golite062009
peptidyl-prolyl cis-trans isomerase activity 0.0709473849313795 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle