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View Structure Prediction Details

Protein: TBL1_ARATH
Organism: Arabidopsis thaliana
Length: 556 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TBL1_ARATH.

Description E-value Query
Range
Subject
Range
TBR_ARATH - Protein trichome birefringence OS=Arabidopsis thaliana GN=TBR PE=1 SV=1
621.0 [0..1] [548..1]
gi|215769281, gi... - gi|50913263|ref|XP_468039.1| hypothetical protein [Oryza sativa (japonica cultivar-group)], gi|46805...
540.0 [0..137] [542..283]
gi|116310768 - gi|116310768|emb|CAH67561.1| OSIGBa0101P20.4 [Oryza sativa (indica cultivar-group)]
528.0 [0..73] [536..229]

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Predicted Domain #1
Region A:
Residues: [1-245]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALDSVKHLP IHGVSAFSSV TVEIKSFFST VKPRKTSTFV YAFVVTFVAL TVFLAFSPSP  60
   61 ITVALAPSIS SYVLPNITVS NSSNSSPSSL DSNFTTLRTP APENLTAVTK NLTFESPVAN 120
  121 GTTDTNAKTI TIQFQTGHAK ENISCPDNKT ARDLDTHGAR KAPLSEVLAV NSTASPKRKQ 180
  181 RRKSSLRKVI ESLKSCEFFE GDWVKDDSYP LYKPGSCNLI DEQFNCISNG RPDVDFQKLK 240
  241 WKPKQ

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.0
Match: 2grxC
Description: No description for 2grxC was found.

Predicted Domain #2
Region A:
Residues: [246-358]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CSLPRLNGGK LLEMIRGRRL VFVGDSLNRN MWESLVCILK GSVKDESQVF EAHGRHQFRW  60
   61 EAEYSFVFKD YNCTVEFFAS PFLVQEWEVT EKNGTKKETL RLDLVGKSSE QYK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.830 N/A N/A c.25.1 Ferredoxin reductase-like, C-terminal NADP-linked domain

Predicted Domain #3
Region A:
Residues: [359-556]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GADILVFNTG HWWTHEKTSK GEDYYQEGST VHPKLDVDEA FRKALTTWGR WVDKNVNPKK  60
   61 SLVFFRGYSP SHFSGGQWNA GGACDDETEP IKNETYLTPY MLKMEILERV LRGMKTPVTY 120
  121 LNITRLTDYR KDAHPSIYRK QKLSAEESKS PLLYQDCSHW CLPGVPDSWN EIFYAELLVK 180
  181 LDQLGGKRRR KALKDHRS

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 72.920819
Match: PF03005.6
Description: No description for PF03005.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle