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View Structure Prediction Details

Protein: RGAP6_ARATH
Organism: Arabidopsis thaliana
Length: 827 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for RGAP6_ARATH.

Predicted Domain #1
Region A:
Residues: [1-370]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEASLAVIQR PQAGASNTVY KSGPLFISSK GLGWTSWKKR WFILTRTSLV FFKNDPSALP  60
   61 QKGGEVNLTL GGIDLNSSGS VVVREDKKLL TVLFPDGRDG RAFTLKAETL DDLYEWKAAL 120
  121 EQALAQAPNA ALVIGQNGIF RTEANNTIEA SFNSWRDQRP LKSSVVGRPI LLALEEIDGS 180
  181 PSFLEKALQF LETYGTKVEG ILRQSADVEE VERRVQEYEQ GKTEFSPEED PHVVGDCVKH 240
  241 VLRQLPSSPV PASCCTALLE AYKIDQNEAR VNSLRSAIIE TFPEPNRRLL LRMLKMMHTI 300
  301 TSHSSENRMT SSAVAACMSP LLLRPLLAGE CDLEGFDTLG DNSAQLLAAA NAANNAQAIV 360
  361 TALLEDYGNM 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 47.69897
Match: 1xa6A
Description: Crystal Structure of the Human Beta2-Chimaerin
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [371-639]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 INDEGLGRCS TSTDSHIGDS GPENSSDEEE IVVKHPDLHT LDIEEGETDD DNDVLLSRKP  60
   61 SESSDYAGSD LYDYKGFGVE DSDAESPRDI HCSVESTDFS ARVKKHIEEP IKDIEVSSVS 120
  121 PTENCYQSGR EAIPSVTPST PLTALRYTTS AEKPASKTTG SSTVNSKRSS SWGRGNGKKT 180
  181 PAKGSFDSSG NDELLIQRLE HMKDELRQRI AKEAKGNAAL QASLERRKQA LHERRLALEQ 240
  241 DVGRLQEQLQ AERDLRSALE VGLSISCGQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [640-827]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSSQAADSKT RAELEEIALA EADVARLKQK VAELHHQLSQ QRQHHLSSLP DAQSHHQFLH  60
   61 NHNTQLKSFQ QDFDSILAFV NHERNQRTDE TSLRADWRNG RGNNRQVPGS PSLNAASLGI 120
  121 PMEEYSPVMD YGRHHHPPAT SAALMELTTR LDFFKERRSQ LMEQIQNLDL NYGSSSSSLH 180
  181 RSSSPPWN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle