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View Structure Prediction Details

Protein: gi|15240144, gi|...
Organism: Arabidopsis thaliana
Length: 158 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15240144, gi|....

Description E-value Query
Range
Subject
Range
gi|11612201 - gi|11612201|gb|AAG37453.1| seed maturation protein LEA 4 [Glycine tomentella]
160.0 [0..2] [155..9]
gi|11612171 - gi|11612171|gb|AAG37438.1| seed maturation protein LEA 4 [Glycine canescens]
153.0 [0..2] [155..9]

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Predicted Domain #1
Region A:
Residues: [1-90]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSMKETASN IAASAKSGMD KTKATLEEKA EKMKTRDPVQ KQMATQVKED KINQAEMQKR  60
   61 ETRQHNAAMK EAAGAGTGLG LGTATHSTTG 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.02
Match: 1ic2A
Description: Tropomyosin
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [91-158]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QVGHGTGTHQ MSALPGHGTG QLTDRVVEGT AVTDPIGRNT GTGRTTAHNT HVGGGGATGY  60
   61 GTGGGYTG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle