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View Structure Prediction Details

Protein: gi|15235292, gi|...
Organism: Arabidopsis thaliana
Length: 288 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15235292, gi|....

Description E-value Query
Range
Subject
Range
gi|45199123, gi|... - gi|45199123|ref|NP_986152.1| AFR605Cp [Ashbya gossypii ATCC 10895], gi|44985263|gb|AAS53976.1| AFR60...
gi|44985263 - gi|44985263|gb|AAS53976.1| AFR605Cp [Ashbya gossypii ATCC 10895]
223.0 [0..4] [287..9]

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Predicted Domain #1
Region A:
Residues: [1-99]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRDDLSLSL GIISVISWSV AEIPQIMTNY NQKSIEGVSI TFLTTWMLGD IFNVVGCLME  60
   61 PASLPVQFYT AVLYTLATLV LYVQSIYYGH IYPRLMKNR

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 28.09691
Match: PF04193.5
Description: No description for PF04193.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [100-171]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RNHQMVDVEE PLLREEAKRP STKSLLCVVS VFLFLGSFNV LSGSRSMDLR GKDRVFVVGG  60
   61 AGARKLLEVS SG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [172-288]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLGENNNIGM WLGWAMAAIY MGGRLPQICM NVRRGNVEGL NPLMFFFAFI GNVTYVASIL  60
   61 VNSVEWSKIE PNLPWLVDSG GCAVLDFLIL LQFFYFHCRK VEADSVKKKH ETGEEAV

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 18.346787
Match: PF04193.5
Description: No description for PF04193.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle