YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|15241554, gi|...
Organism: Arabidopsis thaliana
Length: 353 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15241554, gi|....

Description E-value Query
Range
Subject
Range
gi|21592537 - gi|21592537|gb|AAM64486.1| unknown [Arabidopsis thaliana]
488.0 [0..1] [353..1]

Back

Predicted Domain #1
Region A:
Residues: [1-160]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCSSKLKNLT QENISQINGR PVLQPKSNQV PTLDRRNSLK KSPPKPLNPI ASKIPSPRPI  60
   61 SLISPPLSPN TKSLRKPAGS CKELLRSSST KSKPVISPEN SDGGYKEVMP MVIVQKQPGS 120
  121 IAAARREEVA MKQEERKKKI SHYGRIKSVK SNEKNLNVEH 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [161-353]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKKKRCSFIT TSSDPIYVAY HDKEWGVPVH DDNLLFELLV LTGAQVGSDW TSVLKRRNTF  60
   61 REAFSGFEAE LVADFNEKKI QSIVNDYGIN LSQVLAVVDN AKQILKVKRD LGSFNKYIWG 120
  121 FMKHKPVTTK YTSCQKIPVK TSKSETISKD MVRRGFRFVG PTVIHSLMQA AGLTNDHLIT 180
  181 CPRHLECTAM AAL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 84.522879
Match: 2ofiA
Description: No description for 2ofiA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle