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View Structure Prediction Details

Protein: gi|15229201, gi|...
Organism: Arabidopsis thaliana
Length: 554 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15229201, gi|....

Description E-value Query
Range
Subject
Range
gi|8778871 - gi|8778871|gb|AAF79870.1|AC000348_23 T7N9.27 [Arabidopsis thaliana]
425.0 [0..4] [553..34]

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Predicted Domain #1
Region A:
Residues: [1-297]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRNLGSAFR QELANLDKDP DSHKTAMSNL RSIVKDLDAK VVHVFVAQLS DVKEIGLESG  60
   61 GYTVSLFEDL ARAHGVKIAP HIDIIMPAII RTLSSSEGSL RVQQACSRAV AAMARYGIDP 120
  121 TTPEDKKTNV IHSLCKPLSD SLIDSQHQQH LALGSALCLK SLVDCDNWRS ASSEMVNNVC 180
  181 QSLAVALEAT SSEAKSHMAL VMALSKHNPF TVEAYARLFV KSGLRILDLG VVEGDSQKRL 240
  241 LAIQMLNFLM KNLNPKSISS ELELIYQEME KYQKDQHYVK MAAHETMRQA ERLICEA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 59.39794
Match: 2pkgA
Description: No description for 2pkgA was found.

Predicted Domain #2
Region A:
Residues: [298-479]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPMFDAENCK PRNSLSGSVK STSSLREHDG SVYSRQDRSY VNDQDEYDVL FSGVASGRTL  60
   61 VSGSPLVTFG DNNQETGFVI ESPRIGDQIQ CSGVENGNIE SVWFHQRNRS SEFNESVCSR 120
  121 TNRSRSSRRN TKKRQSGDIC SKHHRHGFAQ DPFTELLDNR QQLLQYSETS SSSSIYDTSG 180
  181 TT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [480-554]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPTNTTEDIC EKPKTDLDSE AKLKTVETEL DPRLGRSKGV LKLGLSVFSI AVAGFASFMW  60
   61 MYLQDDMMPP HLVPT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle