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View Structure Prediction Details

Protein: P24D4_ARATH
Organism: Arabidopsis thaliana
Length: 212 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for P24D4_ARATH.

Description E-value Query
Range
Subject
Range
gi|109066641, gi... - gi|109066643|ref|XP_001091631.1| PREDICTED: similar to transmembrane emp24 protein transport domain ...
243.0 [0..3] [212..10]

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Predicted Domain #1
Region A:
Residues: [1-135]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKMIPTTI LLSALIFSLS PICEAVWLTV PHTGSKCVSE EIQSNVIVLA DYLVISEEHS  60
   61 IFPTVSVKVT APYGTVLHHR ENTTNGQFAF TTQESGTYLA CFEADAKSHG NKDFSINIDW 120
  121 KTGIAAKDWD SIARK

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 14.180456
Match: PF01105.15
Description: No description for PF01105.15 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [136-212]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKIEGVELEF KKLEGAVEAI HENLIYLRNR EAEMRIVSEK TNSRVAWYSI MSLGICIVVS  60
   61 GLQILYLKQY FEKKKLI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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