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View Structure Prediction Details

Protein: PUP22_ARATH
Organism: Arabidopsis thaliana
Length: 394 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUP22_ARATH.

Description E-value Query
Range
Subject
Range
PUP17_ARATH - Probable purine permease 17 OS=Arabidopsis thaliana GN=PUP17 PE=2 SV=2
172.0 [0..1] [394..1]

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Predicted Domain #1
Region A:
Residues: [1-109]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMTEASKHT TTHEESEHVQ NPEPDQVLSQ RQLLQLNQKK WWISVLICLF LVLLGDSLVI  60
   61 LLLNFFYVQD RREDNNQDLQ YKGTWMQALI QNAAFPILIP LFFIFPSPK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [110-207]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNPETINTRF LSIRLILLYF SLGVLVAAHS KLYALGKLYS SYGFFMLISG SQLIFTLIFT  60
   61 AIINRFKFTR WIIISIVLIL VSYAFGGPVF SGEPDENE

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.09
Match: 2i68A
Description: No description for 2i68A was found.

Predicted Domain #3
Region A:
Residues: [208-394]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HFYGIQAWLT FAASVAFALS LCLVQLSFEK LLVKTKRYGN KKVFRMVLEM QICVSSVASV  60
   61 VCLVGLFASG EYKELKGDSE RFKKGETYYV LSLVGLALSW QVWAVGLIGL VLYVSSVFSN 120
  121 IVHMCASPLM AFIVVLAFDF IDDDFSWPRI GALIGSVLAL GSYFYTLHKR NKKKMVEFNQ 180
  181 SENNVEV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle