YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|25406541, gi|...
Organism: Arabidopsis thaliana
Length: 490 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25406541, gi|....

Description E-value Query
Range
Subject
Range
gi|67668083, gi|... - gi|67668083|ref|ZP_00465278.1| General substrate transporter:Major facilitator superfamily [Burkhold...
248.0 [0..2] [424..1040]

Back

Predicted Domain #1
Region A:
Residues: [1-490]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAETMTLLL VNLAGIMERA DESLLPGVYK EVGLALHTDP TGLGSLTLLR SMVQAACYPL  60
   61 AAYMAIRHNR AHVIALGAFL WSAATFLVAF SSTFFQVAVS RALNGIGLAL VAPAIQSLVA 120
  121 DSTDDANRGT AFGWLQLTAN IGSILGGLCS VLIAPLTFMG IPGWRVAFHI VGVISVIVGV 180
  181 LVRVFANDPH FVKDGVDVSN QPGSRKPFCT EVKDLVREAD TVIKIRSFQI IVAQGVTGSF 240
  241 PWSALSFAPM WLELIGFSHG KTAFLMGLFV AASSLGGLFG GKMGDFLSTR LPNSGRIILA 300
  301 QISSASAIPL AAILLLVLPD DPSTAAIHGL ILVLLGLFVS WNAPATNNPI FAEIVPEKSR 360
  361 TSVYALDKSF ESILSSFAPP IVGILAQHVY GYKPIPEGSS RSTEIATDRE NAASLAKALY 420
  421 TSIGLPMAAC CFIYSFLYRS YPLDRDRARM EAFIDSEMRE LLPESSNRDI EFSQEEDPFA 480
  481 NHVNPNLQAR 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.045757
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle