YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: IGMT5_ARATH
Organism: Arabidopsis thaliana
Length: 367 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IGMT5_ARATH.

Description E-value Query
Range
Subject
Range
COMT1_POPTM - Caffeic acid 3-O-methyltransferase 1 OS=Populus tremuloides GN=OMT1 PE=1 SV=1
302.0 [0..1] [367..1]

Back

Predicted Domain #1
Region A:
Residues: [1-367]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHLIPQTGD EETELGLAAV RLANCAAFPM VFKAAIELGV IDTLYLAARD DVTGSSSFLT  60
   61 PSEIAIRLPT KPSNPEAPAL LDRILRLLAS YSMVKCQIID GNRVYKAEPI CRYFLKDNVD 120
  121 EELGTLASQL IVTLDTVFLN TWGELKNVVL EGGVAFGRAN GGLKLFDYIS KDERLSKLFN 180
  181 RTGFSVAVLK KILQVYSGFE GVNVLVDVGG GVGDTLGFVT SKYPNIKGIN FDLTCALTQA 240
  241 PSYPNVEHVA GDMFVDVPKG DAILLKRILH DWTDEDCEKI LKNCWKALPE NGKVIVMEVV 300
  301 TPDEADNRDV ISNIAFDMDL LMLTQLSGGK ERSRAEYVAM AANSGFPRCN FVCSAYHLWV 360
  361 IELTKQA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 78.30103
Match: 1kywA
Description: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.723277178398499 bayes_pls_golite062009
transferase activity 0.64512166557639 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.54403439349476 bayes_pls_golite062009
methyltransferase activity 0.54389223881989 bayes_pls_golite062009
transcription regulator activity 0.4843036104266 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle