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View Structure Prediction Details

Protein: gi|30693281, gi|...
Organism: Arabidopsis thaliana
Length: 386 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30693281, gi|....

Description E-value Query
Range
Subject
Range
gi|218194960, gi... - gi|218194960|gb|EEC77387.1| hypothetical protein OsI_16129 [Oryza sativa Indica Group], gi|116309990...
gi|113564536, gi... - gi|50924738|ref|XP_472721.1| OSJNBa0006M15.17 [Oryza sativa (japonica cultivar-group)], gi|38347102|...
571.0 [0..1] [386..1]

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Predicted Domain #1
Region A:
Residues: [1-137]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGILNKLRN LDAYPKINED FYSRTLSGGV ITLLSSVVMF LLFFSELRLY LHTVTETKLI  60
   61 VDTSRGETLR INFDITFPAL ACSILSVDAM DISGELHLDV KHDIIKRRLD SNGNTIEARQ 120
  121 DGIGATKIEN PLQKHGG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [138-243]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RLGHNETYCG SCYGAEAEEH DCCNSCEDVR EAYRKKGWGV TNPDLIDQCK REGFLQRVKD  60
   61 EEGEGCNIYG FLEVNKVAGN FHFAPGKSFH QSGVHVHDLL AFQKDS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [244-386]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FNISHKINRL TYGDYFPGVV NPLDKVEWSQ DTPNAMYQYF IKVVPTVYTD IRGHTIQSNQ  60
   61 FSVTEHVKSS EAGQLQSLPG VFFFYDLSPI KVTFTEEHIS FLHFLTNVCA IVGGVFTVSG 120
  121 IIDAFIYHGQ KAIKKKMEIG KFS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle