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View Structure Prediction Details

Protein: gi|15232249, gi|...
Organism: Arabidopsis thaliana
Length: 266 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15232249, gi|....

Description E-value Query
Range
Subject
Range
gi|4741948, gi|2... - gi|4741948|gb|AAD28771.1|AF134124_1 Lhcb2 protein [Arabidopsis thaliana], pir||T52323 chlorophyll a/...
364.0 [0..1] [266..1]

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Predicted Domain #1
Region A:
Residues: [1-266]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSAIQHSS FAGQTTLKPS NDLLRKIGAS NGGGRIIMRR TVKSTPQSIW YGPDRPKYLG  60
   61 PFSENTPSYL TGEYPGDYGW DTAGLSADPE TFAKNRELEV IHSRWAMLGA LGCTFPEILS 120
  121 KNGVKFGEAV WFKAGSQIFS EGGLDYLGNP NLIHAQSILA IWACQVVLMG FIEGYRIGGG 180
  181 PLGEGLDPLY PGGAFDPLNL AEDPEAFSEL KVKELKNGRL AMFSMFGFFV QAIVTGKGPI 240
  241 ENLFDHIADP VANNAWAYAT NFVPGK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 91.0
Match: 1rwtA
Description: Crystal Structure of Spinach Major Light-harvesting complex at 2.72 Angstrom Resolution
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle