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View Structure Prediction Details

Protein: BEH1_ARATH
Organism: Arabidopsis thaliana
Length: 276 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BEH1_ARATH.

Description E-value Query
Range
Subject
Range
gi|54657094 - gi|54657094|gb|EAL35927.1| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain [Cryptosporidiu...
gi|67597591 - gi|67597591|ref|XP_666157.1| DNA-directed RNA polymerase II largest chain [Cryptosporidium hominis T...
206.0 [0..69] [245..1676]

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Predicted Domain #1
Region A:
Residues: [1-117]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTASGGGSTA ATGRMPTWKE RENNKKRERR RRAIAAKIFT GLRSQGNYKL PKHCDNNEVL  60
   61 KALCLEAGWI VHEDGTTYRK GSRPTETTVP CSSIQLSPQS SAFQSPIPSY QASPSSS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.69897
Match: 1i3qA
Description: RBP1
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [118-276]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SYPSPTRFDP NQSSTYLIPY LQNLASSGNL APLRISNSAP VTPPISSPRR SNPRLPRWQS  60
   61 SNFPVSAPSS PTRRLHHYTS IPECDESDVS TVDSCRWGNF QSVNVSQTCP PSPTFNLVGK 120
  121 SVSSVGVDVS VKPWEGEKIH DVGIDDLELT LGHNTKGRG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle