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View Structure Prediction Details

Protein: VATO1_ARATH
Organism: Arabidopsis thaliana
Length: 180 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VATO1_ARATH.

Description E-value Query
Range
Subject
Range
gi|50751470 - gi|50751470|ref|XP_422414.1| PREDICTED: similar to ATPase, H+ transporting, V0 subunit B; ATPase, H+...
177.0 [0..7] [179..179]

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Predicted Domain #1
Region A:
Residues: [1-180]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGVVALGHA SSWGAALVRI SPYTFSAIGI AISIGVSVLG AAWGIYITGS SLIGAAIEAP  60
   61 RITSKNLISV IFCEAVAIYG VIVAIILQTK LESVPSSKMY DAESLRAGYA IFASGIIVGF 120
  121 ANLVCGLCVG IIGSSCALSD AQNSTLFVKI LVIEIFGSAL GLFGVIVGII MSAQATWPTK 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 23.154902
Match: 2bl2A
Description: The membrane rotor of the V-type ATPase from Enterococcus hirae
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle