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View Structure Prediction Details

Protein: PAO5_ARATH
Organism: Arabidopsis thaliana
Length: 533 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PAO5_ARATH.

Description E-value Query
Range
Subject
Range
gi|27543472 - gi|27543472|gb|AAO16558.1| putative polyamine oxidase [Brassica juncea]
258.0 [0..1] [533..1]

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Predicted Domain #1
Region A:
Residues: [1-533]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKARIVII GAGMAGLTAA NKLYTSSNNT FELSVVEGGS RIGGRINTSE FSSEKIEMGA  60
   61 TWIHGIGGSP VYRIAKETGS LVSDEPWECM DSTIDKAKTF AEGGFEIEPS IVESISGLFT 120
  121 ALMELAQGKE ISQSDADLSR LAHIYETATR VCSKGSSTSV GSFLKSGFDA YWDSISNGGE 180
  181 EGVKGYGKWS RKSLEEAIFT MFSNTQRTYT SADELSTLDF AAESEYQMFP GEEITIAKGY 240
  241 LSVIHHLASV LPQGVIQLNR KVTKIEWQSN EVKLHFSDGS VVFADHVIVT VSLGVLKAGI 300
  301 ETDAELFSPP LPDFKSDAIR RLGYGVVNKL FVEMSQRKFP SLQLVFDRED SEFRFVKIPW 360
  361 WMRRTATITP IHSNSKVLLS WFAGKEALEL EKLTDEEIKD AVMTTISCLT GKEVKNDTAK 420
  421 PLTNGSLNDD DEAMKITKVL KSKWGSDPLF RGSYSYVAVG SSGDDLDAMA EPLPKINKKV 480
  481 GQVNGHDQAK VHELQVMFAG EATHRTHYST THGAYYSGLR EANRLLKHYK CNF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 55.0
Match: 2iw5A
Description: No description for 2iw5A was found.

Predicted functions:

Term Confidence Notes
oxidoreductase activity 1.74912150465836 bayes_pls_golite062009
catalytic activity 1.56773888754354 bayes_pls_golite062009
nucleic acid binding 1.40489537639992 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor 1.35270507470983 bayes_pls_golite062009
transcription regulator activity 1.33999698135979 bayes_pls_golite062009
DNA binding 1.33849860747515 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors 0.859522789363113 bayes_pls_golite062009
transcription factor activity 0.759303230149009 bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity 0.377387914078511 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle