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View Structure Prediction Details

Protein: CTPA2_ARATH
Organism: Arabidopsis thaliana
Length: 515 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CTPA2_ARATH.

Description E-value Query
Range
Subject
Range
gi|30684169 - gi|30684169|ref|NP_849401.1| C-terminal processing protease, putative [Arabidopsis thaliana]
405.0 [0..1] [515..1]

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Predicted Domain #1
Region A:
Residues: [1-90]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVLASSSLS PISFTKPNKI NPNFSIQVKL WVKQPPKISK ASKFSYARSR SNISRSNAAN  60
   61 PGVVFVCNRF LCVIERNDQR KLSGKVMMKS 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [91-515]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVNFRQNLSV ALVRIVSVLL VSSISVVTTD SPPSWGLTEE NLLFLEAWRT IDRAYIDKTF  60
   61 NGQSWFRYRE TALRNEPMNT REETYMAIKK MVATLDDPFT RFLEPGKFKS LRSGTQGAVT 120
  121 GVGLSIGYPT ASDGPPAGLV VISAAPGGPA NRAGILPGDV IQGIDNTTTE TLTIYDAAQM 180
  181 LQGPEGSAVE LAIRSGPETR LLTLTRERVS VNPVKSRLCE LPGSGSNSPK IGYIKLTTFN 240
  241 QNASSAVREA IETLRGNNVN AFVLDLRDNS GGSFPEGIEI AKFWLDKGVI VYICDSRGVR 300
  301 DIYDTDGSNA IATSEPLAVL VNKGTASASE ILAGALKDNK RALVYGEPTY GKGKIQSVFE 360
  361 LSDGSGLAVT VARYETPAHT DIDKVGVTPD HPLPKSFPKD EEAFCGCLKD PTAACYLNQG 420
  421 LLFSR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 72.0
Match: 1fc6A
Description: Photosystem II D1 C-terminal processing protease
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.56104302664892 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle