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View Structure Prediction Details

Protein: GRS16_ARATH
Organism: Arabidopsis thaliana
Length: 293 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GRS16_ARATH.

Description E-value Query
Range
Subject
Range
gi|21592395 - gi|21592395|gb|AAM64346.1| unknown [Arabidopsis thaliana]
376.0 [0..1] [293..1]

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Predicted Domain #1
Region A:
Residues: [1-80]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAITISSSL HASASPRVVR PHVSRNTPVI TLYSRFTPSF SFPSLSFTLR DTAPSRRRSF  60
   61 FIASAVKSLT ETELLPITEA 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [81-181]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSIPSASGVY AVYDKSDELQ FVGISRNIAA SVSAHLKSVP ELCGSVKVGI VEEPDKAVLT  60
   61 QAWKLWIEEH IKVTGKVPPG NKSGNNTFVK QTPRKKSDIR L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.69897
Match: 2diyA
Description: No description for 2diyA was found.

Predicted Domain #3
Region A:
Residues: [182-293]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPGRHVELTV PLEELIDRLV KESKVVAFIK GSRSAPQCGF SQRVVGILES QGVDYETVDV  60
   61 LDDEYNHGLR ETLKNYSNWP TFPQIFVKGE LVGGCDILTS MYENGELANI LN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.69897
Match: 1ykaA
Description: Solution structure of Grx4, a monothiol glutaredoxin from E. coli.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle