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View Structure Prediction Details

Protein: PMTS_ARATH
Organism: Arabidopsis thaliana
Length: 724 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PMTS_ARATH.

Description E-value Query
Range
Subject
Range
gi|10176951 - gi|10176951|dbj|BAB10271.1| ankyrin-like protein [Arabidopsis thaliana]
584.0 [0..16] [724..11]

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Predicted Domain #1
Region A:
Residues: [1-231]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMERKREMGI AYFARRIKQP RGIWVKMTFI VVLGLCFVFF WSFLSSSAST FNVQRESFDD  60
   61 IAEPVSSRTK SAHEVSESSK LHERGKVESG SKSKEGKKVG GSSVHKHETK KKKEHAVSHP 120
  121 HKKKDVPKPV VEEVVVKEDQ EHEEAESDDS DQSNKEDGEE GTESDGNEGE SDGNGDGSVD 180
  181 DSSASVDEEV EEKNEEVTVN EISKKRKRKG PVFDPKAEYS WRLCNTRSKH N

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.69897
Match: 2fkjA
Description: No description for 2fkjA was found.

Predicted Domain #2
Region A:
Residues: [232-299]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YMPCIDNDGL IGRLQSYRHR ERSCPKKPVM CLVPLPHDGY DPPVSWPESK SKILYKNVAH  60
   61 PKLAAYIK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.0
Match: 1p91A
Description: Crystal Structure of RlmA(I) enzyme: 23S rRNA n1-G745 methyltransferase (NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET ER19)
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [300-571]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KHNWVNETGE YLSFPQNQTT FNGNVLQYLE FIQEMVPDIE WGKNVRIVLD IGCSDSSFVA  60
   61 ALLDKDVLTV SLGLKDDLVD LAQVALERGF PTFVSSLASR RLPFPSGVFD TIHCAACGVH 120
  121 WHSHGGKLLL EMNRILRPNG YFILSSNNDK IEDDEAMTAL TASICWNILA HKTEEASEMG 180
  181 VRIYQKPESN DIYELRRKKN PPLCEDNENP DAAWYVPMKT CIYEIPSAIE QHGAEWPEEW 240
  241 PKRLETYPEW LTSKEKAMED TNHWNAMVNK SY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.0
Match: 2p35A
Description: No description for 2p35A was found.

Predicted Domain #4
Region A:
Residues: [572-724]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTGLGIDWLH IRNVMDMTAI YGGFGASLVK QNVWVMNVVP VHSPDTLPFI YERGLLGIYH  60
   61 DWCEPFGTYP RSYDLLHADH LFSRLKNRCK QPASIVVEMD RLTRPGGWVV VRDKVEILEP 120
  121 LEEILRSLHW EIRMTYAQDK EGMLCAQKTL WRP

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 4.26
Match: 2pxxA
Description: No description for 2pxxA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle