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View Structure Prediction Details

Protein: gi|26450279, gi|...
Organism: Arabidopsis thaliana
Length: 139 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|26450279, gi|....

Description E-value Query
Range
Subject
Range
gi|7487436, gi|1... - pir||T02564 hypothetical protein At2g32650 [imported] - Arabidopsis thaliana, gi|42571021|ref|NP_97...
154.0 [0..1] [139..1]

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Predicted Domain #1
Region A:
Residues: [1-62]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLIMTTPF PGSVTTCKKT NNLSVQRAFR VTCMQTEKPL EELYNVKVER KVSQKRLEEL  60
   61 GV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.467 N/A N/A a.65.1 Annexin
View Download 0.401 N/A N/A a.4.9 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View Download 0.398 N/A N/A d.10.1 DNA-binding domain
View Download 0.379 N/A N/A d.54.1 Enolase N-terminal domain-like
View Download 0.366 N/A N/A b.40.4 Nucleic acid-binding proteins

Predicted Domain #2
Region A:
Residues: [63-139]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRWSVWKTGK CKLPWDWQVD QLVYIEQGEV RVVPEGSKRY MQFLAGDLVR YPKWLEADLF  60
   61 FNAPYIERYC FKAYGDD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.69897
Match: 1o5uA
Description: Crystal structure of a novel Thermotoga maritima enzyme (TM1112) from Thermotoga maritima at 1.83 A resolution
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle