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View Structure Prediction Details

Protein: SKI19_ARATH
Organism: Arabidopsis thaliana
Length: 302 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SKI19_ARATH.

Description E-value Query
Range
Subject
Range
gi|21593361 - gi|21593361|gb|AAM65310.1| F-box protein family, AtFBL20 [Arabidopsis thaliana]
155.0 [0..1] [302..1]

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Predicted Domain #1
Region A:
Residues: [1-302]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW  60
   61 RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY FGTVDLLNYI AHRSSNLRSL 120
  121 RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN 180
  181 DDDALAIAET MPKLRHLQLC GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC 240
  241 FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF 300
  301 DF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.221849
Match: 1fs2A
Description: Skp2; Cyclin A/CDK2-associated p19, Skp2
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle