YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: HDG11_ARATH
Organism: Arabidopsis thaliana
Length: 722 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HDG11_ARATH.

Description E-value Query
Range
Subject
Range
gi|19070143 - gi|19070143|gb|AAL83725.1|AF328842_1 homeodomain protein HB2 [Picea abies]
799.0 [0..16] [716..10]
gi|109729926 - gi|109729926|tpg|DAA05777.1| TPA: TPA_inf: class IV HD-Zip protein HDZ43 [Physcomitrella patens]
797.0 [0..10] [713..91]
gi|7267248, gi|2... - gi|7267248|emb|CAB81031.1| putative homeotic protein [Arabidopsis thaliana], pir||E85061 probable ho...
790.0 [0..16] [719..41]
gi|109729920 - gi|109729920|tpg|DAA05774.1| TPA: TPA_inf: class IV HD-Zip protein HDZ44 [Selaginella moellendorffii...
789.0 [0..10] [716..83]

Back

Predicted Domain #1
Region A:
Residues: [1-95]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFVVGVGGS GSGSGGDGGG SHHHDGSETD RKKKRYHRHT AQQIQRLESS FKECPHPDEK  60
   61 QRNQLSRELG LAPRQIKFWF QNRRTQLKAQ HERAD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.39794
Match: 1fjlA
Description: Paired protein
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [96-218]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSALKAENDK IRCENIAIRE ALKHAICPNC GGPPVSEDPY FDEQKLRIEN AHLREELERM  60
   61 STIASKYMGR PISQLSTLHP MHISPLDLSM TSLTGCGPFG HGPSLDFDLL PGSSMAVGPN 120
  121 NNL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [219-469]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QSQPNLAISD MDKPIMTGIA LTAMEELLRL LQTNEPLWTR TDGCRDILNL GSYENVFPRS  60
   61 SNRGKNQNFR VEASRSSGIV FMNAMALVDM FMDCVKWTEL FPSIIAASKT LAVISSGMGG 120
  121 THEGALHLLY EEMEVLSPLV ATREFCELRY CQQTEQGSWI VVNVSYDLPQ FVSHSQSYRF 180
  181 PSGCLIQDMP NGYSKVTWVE HIETEEKELV HELYREIIHR GIAFGADRWV TTLQRMCERF 240
  241 ASLSVPASSS R

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.71
Match: 2r55A
Description: No description for 2r55A was found.

Predicted Domain #4
Region A:
Residues: [470-591]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLGGVILSPE GKRSMMRLAQ RMISNYCLSV SRSNNTRSTV VSELNEVGIR VTAHKSPEPN  60
   61 GTVLCAATTF WLPNSPQNVF NFLKDERTRP QWDVLSNGNA VQEVAHISNG SHPGNCISVL 120
  121 RG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [592-722]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNATHSNNML ILQESSTDSS GAFVVYSPVD LAALNIAMSG EDPSYIPLLS SGFTISPDGN  60
   61 GSNSEQGGAS TSSGRASASG SLITVGFQIM VSNLPTAKLN MESVETVNNL IGTTVHQIKT 120
  121 ALSGPTASTT A

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle