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View Structure Prediction Details

Protein: gi|15228598, gi|...
Organism: Arabidopsis thaliana
Length: 499 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15228598, gi|....

Description E-value Query
Range
Subject
Range
gi|60657600 - gi|60657600|gb|AAX33321.1| secondary cell wall-related glycosyltransferase family 47 [Populus tremul...
463.0 [0..1] [497..1]
gi|11357531, gi|... - gi|6967106|emb|CAB72489.1| putative protein [Arabidopsis thaliana], gi|15230692|ref|NP_190126.1| exo...
418.0 [0..1] [496..3]
gi|113623864, gi... - gi|51964912|ref|XP_507240.1| PREDICTED OSJNBa0016C11.34 gene product [Oryza sativa (japonica cultiva...
406.0 [0..16] [499..77]

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Predicted Domain #1
Region A:
Residues: [1-151]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEKTNSRYL GVIITRKSII FLFISIITVL SWFFIFSSTN PNRVLDHISV SESTDVPLII  60
   61 IKNSNSSPQN NAPKPQNREG AETEEPIKEN RGGTKTESSM NQNRGETLRC IQRVSPSPRP 120
  121 LKVYMYDMSP EFHFGLLGWK PERNGVVWPD I

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [152-353]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RVNVPHHPGG LNLQHSVEYW LTLDLLFSEL PEDSRSSRAA IRVKNSSEAD VVFVPFFSSL  60
   61 SYNRFSKVNQ KQKKSQDKEL QENVVKYVTS QKEWKTSGGK DHVIMAHHPN SMSTARHKLF 120
  121 PAMFVVADFG RYSPHVANVD KDIVAPYKHL VPSYVNDTSG FDGRPILLYF QGAIYRKAGG 180
  181 FVRQELYNLL KEEKDVHFSF GS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [354-499]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VRNHGISKAG EGMRSSKFCL NIAGDTPSSN RLFDAIASHC IPVIISDDIE LPYEDVLNYN  60
   61 EFCLFVRSSD ALKKGFLMGL VRSIGREEYN KMWLRLKEVE RYFDLRFPVK DDEGDYAVQM 120
  121 IWKAVARKAP LVKMKVHRFQ RFTRPF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle