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View Structure Prediction Details

Protein: CHL_ARATH
Organism: Arabidopsis thaliana
Length: 353 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CHL_ARATH.

Description E-value Query
Range
Subject
Range
gi|113565516, gi... - gi|115460690|ref|NP_001053945.1| Os04g0626400 [Oryza sativa (japonica cultivar-group)], gi|113565516...
253.0 [0..40] [353..21]

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Predicted Domain #1
Region A:
Residues: [1-105]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILLSSSISL SRPVSSQSFS PPAATSTRRS HSSVTVKCCC SSRRLLKNPE LKCSLENLFE  60
   61 IQALRKCFVS GFAAILLLSQ AGQGIALDLS SGYQNICQLG SAAAV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [106-353]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GENKLTLPSD GDSESMMMMM MRGMTAKNFD PVRYSGRWFE VASLKRGFAG QGQEDCHCTQ  60
   61 GVYTFDMKES AIRVDTFCVH GSPDGYITGI RGKVQCVGAE DLEKSETDLE KQEMIKEKCF 120
  121 LRFPTIPFIP KLPYDVIATD YDNYALVSGA KDKGFVQVYS RTPNPGPEFI AKYKNYLAQF 180
  181 GYDPEKIKDT PQDCEVTDAE LAAMMSMPGM EQTLTNQFPD LGLRKSVQFD PFTSVFETLK 240
  241 KLVPLYFK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.09691
Match: 2hzqA
Description: No description for 2hzqA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle