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View Structure Prediction Details

Protein: RL83_ARATH
Organism: Arabidopsis thaliana
Length: 258 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL83_ARATH.

Description E-value Query
Range
Subject
Range
RL2_THEP3 - 50S ribosomal protein L2 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplB PE...
gi|242230648, gi... - gi|242257804|ref|ZP_04802654.1| ribosomal protein L2 [Thermoanaerobacter sp. X513], gi|242230648|gb|...
RL2_THEPX - 50S ribosomal protein L2 OS=Thermoanaerobacter sp. (strain X514) GN=rplB PE=3 SV=1
gi|241904338, gi... - gi|241904338|ref|ZP_04789040.1| ribosomal protein L2 [Thermoanaerobacter brockii subsp. finnii Ako-1...
320.0 [0..4] [256..35]

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Predicted Domain #1
Region A:
Residues: [1-258]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR  60
   61 VAFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN VLPLRSIPEG AVICNVEHHV 120
  121 GDRGVFARAS GDYAIVIAHN PDNDTSRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML 180
  181 KAGNAYHKYR VKRNCWPKVR GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGKKVGLIAA 240
  241 RRTGRLRGQA AALASKAD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 69.30103
Match: 1s1iB
Description: Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle