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View Structure Prediction Details

Protein: SSY2_ARATH
Organism: Arabidopsis thaliana
Length: 792 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSY2_ARATH.

Description E-value Query
Range
Subject
Range
SSY2_SOLTU - Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS2 PE=1 SV=3
487.0 [0..21] [792..1]

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Predicted Domain #1
Region A:
Residues: [1-197]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVAESSFP LLCQIKTQRR INSSTLRHSR VSYHDLPSGS LSFRSRSFVL GHRCKCVSRV  60
   61 EASGSDDDEP EDALQATIDK SKKVLAMQRN LLHQIAERRK LVSSIKESTP DLDDAKASSK 120
  121 QESASSVNAN TDATKKEIMD GDANGSVSPS TYGKSSLSKE PEAKTFSPST ESLKNRKQSS 180
  181 ASVISSSPVT SPQKPSD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.0
Match: 1i3qA
Description: RBP1
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [198-297]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VATNGKPWSS VVASSVDPPY KPSSVMTSPE KTSDPVTSPG KPSKSRAGAF WSDPLPSYLT  60
   61 KAPQTSTMKT EKYVEKTPDV ASSETNEPGK DEEKPPPLAG 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.51
Match: 2j63A
Description: No description for 2j63A was found.

Predicted Domain #3
Region A:
Residues: [298-792]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ANVMNVILVA AECAPFSKTG GLGDVAGALP KSLARRGHRV MVVVPRYAEY AEAKDLGVRK  60
   61 RYKVAGQDME VMYFHAFIDG VDFVFIDSPE FRHLSNNIYG GNRLDILKRM VLFCKAAVEV 120
  121 PWYVPCGGVC YGDGNLAFIA NDWHTALLPV YLKAYYRDHG IMKYTRSVLV IHNIAHQGRG 180
  181 PVDDFSYVDL PSHYLDSFKL YDPVGGEHFN IFAAGLKAAD RVLTVSHGYS WEVKTLEGGW 240
  241 GLHNIINEND WKFRGIVNGI DTQEWNPEFD TYLHSDDYTN YSLENLHIGK PQCKAALQKE 300
  301 LGLPVRPDVP LIGFIGRLDH QKGVDLIAEA VPWMMSQDVQ LVMLGTGRPD LEEVLRQMEH 360
  361 QYRDKARGWV GFSVKTAHRI TAGADILLMP SRFEPCGLNQ LYAMNYGTIP VVHAVGGLRD 420
  421 TVQQFDPYSE TGLGWTFDSA EAGKLIHALG NCLLTYREYK ESWEGLQRRG MTQDLSWDNA 480
  481 AEKYEEVLVA AKYHW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 88.39794
Match: 1rzuA
Description: Crystal structure of the glycogen synthase from A. tumefaciens in complex with ADP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
glycogen phosphorylase activity 3.34851380039572 bayes_pls_golite062009
transferase activity, transferring hexosyl groups 3.04530122157712 bayes_pls_golite062009
catalytic activity 3.02192459767177 bayes_pls_golite062009
transferase activity, transferring glycosyl groups 2.94500176353224 bayes_pls_golite062009
phosphorylase activity 2.90311878311075 bayes_pls_golite062009
glycogen (starch) synthase activity 2.05207088363955 bayes_pls_golite062009
glucosyltransferase activity 1.8062586862583 bayes_pls_golite062009
transferase activity 1.67770954408305 bayes_pls_golite062009
UDP-N-acetylglucosamine 2-epimerase activity 1.63103907245982 bayes_pls_golite062009
lipopolysaccharide heptosyltransferase activity 1.555502709955 bayes_pls_golite062009
UDP-glucosyltransferase activity 1.4199532885636 bayes_pls_golite062009
UDP-glycosyltransferase activity 1.30934991061674 bayes_pls_golite062009
starch synthase activity 1.073959209177 bayes_pls_golite062009
racemase and epimerase activity, acting on carbohydrates and derivatives 0.27693350081385 bayes_pls_golite062009
alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity 0.22009679964126 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle