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View Structure Prediction Details

Protein: gi|16930467, gi|...
Organism: Arabidopsis thaliana
Length: 265 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16930467, gi|....

Description E-value Query
Range
Subject
Range
gi|3036948 - gi|3036948|dbj|BAA25392.1| light harvesting chlorophyll a/b-binding protein [Nicotiana sylvestris]
361.0 [0..1] [265..1]

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Predicted Domain #1
Region A:
Residues: [1-265]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSTMALSS PAFAGKAVKP AASDVLGSGR VTMRKTVAKP KGPSGSPWYG SDRVKYLGPF  60
   61 SGEPPSYLTG EFPGDYGWDT AGLSADPETF ARNRELEVIH SRWAMLGALG CVFPELLARN 120
  121 GVKFGEAVWF KAGSQIFSDG GLDYLGNPSL VHAQSILAIW ATQVILMGAV EGYRVAGDGP 180
  181 LGEAEDLLYP GGSFDPLGLA TDPEAFAELK VKELKNGRLA MFSMFGFFVQ AIVTGKGPLE 240
  241 NLADHLADPV NNNAWAFATN FVPGK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 89.522879
Match: 1vcrA
Description: An icosahedral assembly of light-harvesting chlorophyll a/b protein complex from pea thylakoid membranes
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle