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View Structure Prediction Details

Protein: MYB21_ARATH
Organism: Arabidopsis thaliana
Length: 226 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MYB21_ARATH.

Description E-value Query
Range
Subject
Range
gi|2280528 - gi|2280528|dbj|BAA21618.1| ATMYB3 [Arabidopsis thaliana]
203.0 [0..16] [226..16]

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Predicted Domain #1
Region A:
Residues: [1-126]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKRGGGSSG GSGSSAEAEV RKGPWTMEED LILINYIANH GDGVWNSLAK SAGLKRTGKS  60
   61 CRLRWLNYLR PDVRRGNITP EEQLIIMELH AKWGNRWSKI AKHLPGRTDN EIKNFWRTRI 120
  121 QKYIKQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.522879
Match: 1h88C
Description: c-Myb, DNA-binding domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [127-226]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDVTTTSSVG SHHSSEINDQ AASTSSHNVF CTQDQAMETY SPTPTSYQHT NMEFNYGNYS  60
   61 AAAVTATVDY PVPMTVDDQT GENYWGMDDI WSSMHLLNGN 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle