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View Structure Prediction Details

Protein: BEH3_ARATH
Organism: Arabidopsis thaliana
Length: 284 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BEH3_ARATH.

Description E-value Query
Range
Subject
Range
gi|46228363 - gi|46228363|gb|EAK89262.1| putative DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' ...
gi|66359288 - gi|66359288|ref|XP_626822.1| DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' subunit...
199.0 [0..4] [231..1636]

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Predicted Domain #1
Region A:
Residues: [1-150]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSGTRTPTW KERENNKRRE RRRRAIAAKI FAGLRIHGNF KLPKHCDNNE VLKALCNEAG  60
   61 WTVEDDGTTY RKGCKPMDRM DLMNGSTSAS PCSSYQHSPR ASYNPSPSSS SFPSPTNPFG 120
  121 DANSLIPWLK NLSSNSPSKL PFFHGNSISA 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 88.769551
Match: PF05687.4
Description: No description for PF05687.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [151-284]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVTPPLARSP TRDQVTIPDS GWLSGMQTPQ SGPSSPTFSL VSRNPFFDKE AFKMGDCNSP  60
   61 MWTPGQSGNC SPAIPAGVDQ NSDVPMADGM TAEFAFGCNA MAANGMVKPW EGERIHGECV 120
  121 SDDLELTLGN SRTR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle