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View Structure Prediction Details

Protein: gi|15233218, gi|...
Organism: Arabidopsis thaliana
Length: 95 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15233218, gi|....

Description E-value Query
Range
Subject
Range
gi|113205376 - gi|113205376|gb|AAU93592.2| uncharacterized plant-specific domain TIGR01589 family protein [Solanum...
136.0 [0..6] [89..54]
gi|145339748, gi... - gi|62320428|dbj|BAD94891.1| putative protein [Arabidopsis thaliana], gi|145339748|ref|NP_191729.2| u...
135.0 [0..6] [89..51]
gi|115435332, gi... - gi|125569550|gb|EAZ11065.1| hypothetical protein OsJ_00910 [Oryza sativa Japonica Group], gi|1154353...
135.0 [0..6] [89..90]

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Predicted Domain #1
Region A:
Residues: [1-95]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADSSSASYI HMVQHMIEKC LIFHMSKEEC VEALSKHANI TPVITSTVWK ELEKENKEFF  60
   61 KAYEERQSKQ EQMSEEETNQ MIQKIISDSS KESDD

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 35.958607
Match: PF09713.1
Description: No description for PF09713.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.804 N/A N/A a.4.1 Homeodomain-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle