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View Structure Prediction Details

Protein: RPI1_ARATH
Organism: Arabidopsis thaliana
Length: 267 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPI1_ARATH.

Description E-value Query
Range
Subject
Range
gi|21592672 - gi|21592672|gb|AAM64621.1| putative ribose 5-phosphate isomerase [Arabidopsis thaliana]
257.0 [0..1] [267..1]

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Predicted Domain #1
Region A:
Residues: [1-267]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSAFDPLVT ATEDLAAVNS APPLSNLTQE ELKKIAAYKA VEFVESGMVI GLGTGSTAKH  60
   61 AVARISELLR EGKLKDIIGI PTSTTTHEQA VSLGIPLSDL DSHPVVDLSI DGADEVDPAL 120
  121 NLVKGRGGSL LREKMIEGAS KKFVVIVDES KLVKYIGGSG LAVPVEVVPF CCDFTRGKLE 180
  181 ELFRDSGCVA KLRMKIGSNG EEAAPAVTDN RNYVVDLYLE RDIGDLEVAS EAILRFPGVV 240
  241 EHGMFLGMAT TLIVAGKFGV TVKDRFG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 58.30103
Match: 1lk5A
Description: D-ribose-5-phosphate isomerase (RpiA), catalytic domain; D-ribose-5-phosphate isomerase (RpiA), lid domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
ribose-5-phosphate isomerase activity 2.78510459473943 bayes_pls_golite062009
intramolecular oxidoreductase activity 2.15381323621148 bayes_pls_golite062009
6-phosphogluconolactonase activity 1.97756803122763 bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting aldoses and ketoses 1.65800801564277 bayes_pls_golite062009
catalytic activity 1.31732715713197 bayes_pls_golite062009
nucleic acid binding 1.15193795385115 bayes_pls_golite062009
binding 0.867979574569016 bayes_pls_golite062009
transcription regulator activity 0.527142798518238 bayes_pls_golite062009
DNA binding 0.465566131334457 bayes_pls_golite062009
glucosamine-6-phosphate deaminase activity 0.111185777194415 bayes_pls_golite062009
isomerase activity 0.102415560220489 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle