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View Structure Prediction Details

Protein: SERA1_ARATH
Organism: Arabidopsis thaliana
Length: 603 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SERA1_ARATH.

Description E-value Query
Range
Subject
Range
gi|21536501 - gi|21536501|gb|AAM60833.1| Phosphoglycerate dehydrogenase-like protein [Arabidopsis thaliana]
522.0 [0..15] [603..15]

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Predicted Domain #1
Region A:
Residues: [1-603]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSATAAASSS IAVATNSLRN VTLSSRSPLP SAISVAFPSR GRNTLQRRLV LVSCSTGDGS  60
   61 KPTILVAEKL GDAGIKLLED VANVDCSYNM TPEELNIKIS LCDALIVRSG TKVGREVFES 120
  121 SHGRLKVVGR AGVGIDNVDL SAATEFGCLV VNAPTANTIA AAEHGIALMA AMARNVAQAD 180
  181 ASVKAGEWKR NKYVGVSLVG KTLAVLGFGK VGTEVARRAK GLGMRVIAHD PYAPADRAHA 240
  241 IGVDLVSFDE ALATADFISL HMPLTPTTSK ILNDETFAKM KKGVRIVNVA RGGVIDEDAL 300
  301 VRALDAGIVA QAALDVFTKE PPAKDSKLVQ HERVTVTPHL GASTMEAQEG VAIEIAEAVV 360
  361 GALNGELAAT AVNAPMVSAE VLTELKPYVV LAEKLGRLAV QLVAGGSGVK NAKITYASAR 420
  421 ATDDLDTRLL RAMITKGIIE PISDVYVNLV NADFTAKQRG LRLSEERVLL DGSPESPLET 480
  481 ITVQLSNVES KFASSLSESG EVKVEGKVKD GVPHLTKVGS FEVDVTLEGS IILCRQVDQP 540
  541 GMIGTVGSIL GESNVNVNFM SVGRIAPRKQ AIMAIGVDDI PSKETLKKIG EIPAVEEFVF 600
  601 LKL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 112.0
Match: 1ygyA
Description: Crystal Structure of D-3-Phosphoglycerate dehydrogenase From Mycobacterium tuberculosis
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle