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View Structure Prediction Details

Protein: JAL28_ARATH
Organism: Arabidopsis thaliana
Length: 470 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for JAL28_ARATH.

Description E-value Query
Range
Subject
Range
gi|6694745 - gi|6694745|gb|AAF25385.1|AF214574_1 myrosinase-binding protein-like protein [Arabidopsis thaliana]
370.0 [0..1] [470..1]

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Predicted Domain #1
Region A:
Residues: [1-70]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQKLEAKGG EMGDVWDDGV YENVRKVYVG QAQYGIAFVK FEYVNGSQVV VGDEHGKKTE  60
   61 LGVEEFEIDA 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.69897
Match: 1c3kA
Description: Heltuba lectin
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [71-365]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDYIVYVEGY REKVNDMTSE MITFLSIKTF KGKTSHPIEK RPGVKFVLHG GKIVGFHGRS  60
   61 TDVLHSLGAY VSLSSTIKLL GKWIKVEQKG EGPGLRCSHG IAQVGNKIYS FGGEFTPNQP 120
  121 IDKHLYVFDL ETRTWSISPA TGDVPHLSCL GVRMVSVGST LYVFGGRDAS RQYNGFYSFD 180
  181 TTTNEWKLLT PVEEGPTPRS FHSMAADEEN VYVFGGVSAT ARLNTLDSYN IVDKKWFHCS 240
  241 TPGDSLTARG GAGLEVVQGK VWVVYGFNGC EVDDVHYYDP VQDKWTQVET FGVRP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 53.0
Match: 1x2jA
Description: Structural basis for the defects of human lung cancer somatic mutations in the repression activity of Keap1 on Nrf2
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [366-470]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SERSVFASAA IGKHIVIFGG EIAMDPLAHV GPGQLTDGTF ALDTETLQWE RLDKFGGEEE  60
   61 TPSSRGWTAS TTATIDGKKG LVMHGGKAPT NDRFDDLFFY GIDSA

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.38
Match: 2dyhA
Description: No description for 2dyhA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle