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View Structure Prediction Details

Protein: RH25_ARATH
Organism: Arabidopsis thaliana
Length: 563 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RH25_ARATH.

Description E-value Query
Range
Subject
Range
gi|14334882 - gi|14334882|gb|AAK59619.1| putative RNA helicase [Arabidopsis thaliana]
380.0 [0..1] [563..1]

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Predicted Domain #1
Region A:
Residues: [1-80]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSDGPKSGK KRREIRAKLV KKLTSDEDGS GKLVKDNNKS LKRGREGKSD VDEPLIKKPA  60
   61 STTPLVTQIA KTSDSYLSKT 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 73.69897
Match: 2db3A
Description: No description for 2db3A was found.

Predicted Domain #2
Region A:
Residues: [81-263]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RFDQFPLSPL TLKGIEDAGF KTMTVVQEAT LPLILQGKDI LAKAKTGTGK TVAFLLPSIE  60
   61 AVIKAPPASR DNRHPPIIVL VVCPTRELAC QAAAEANILL KYHPSIGVQV VIGGTKLPTE 120
  121 QRRLQKSPCQ ILVATPGRLK DHIDNTSGFA TRLMGVKVLV LDEADHLLDM GFRREIERII 180
  181 AAV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.69897
Match: 2fz4A
Description: No description for 2fz4A was found.

Predicted functions:

Term Confidence Notes
translation initiation factor activity 7.79457008386475 bayes_pls_golite062009
translation factor activity, nucleic acid binding 4.98637553020315 bayes_pls_golite062009
translation regulator activity 4.94658029227343 bayes_pls_golite062009
4.704140727858 bayes_pls_golite062009
structural constituent of ribosome 4.56509805974548 bayes_pls_golite062009
structural molecule activity 3.58406348799895 bayes_pls_golite062009
transporter activity 3.54081962055485 bayes_pls_golite062009
transmembrane transporter activity 3.29578916194335 bayes_pls_golite062009
nucleoside-triphosphatase activity 2.95079405147356 bayes_pls_golite062009
pyrophosphatase activity 2.87427509025394 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 2.85499564954033 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 2.85178667290149 bayes_pls_golite062009
motor activity 2.79327761685782 bayes_pls_golite062009
microtubule motor activity 2.74365461017633 bayes_pls_golite062009
binding 2.64537357529343 bayes_pls_golite062009
hydrolase activity 2.55157966585974 bayes_pls_golite062009
nucleic acid binding 2.51683451033161 bayes_pls_golite062009
ATPase activity 2.39535714892224 bayes_pls_golite062009
RNA binding 2.29590582680214 bayes_pls_golite062009
ATPase activity, coupled 2.18396165590908 bayes_pls_golite062009
RNA cap binding 2.17871969124431 bayes_pls_golite062009
DNA binding 1.94055378599526 bayes_pls_golite062009
transcription regulator activity 1.83584389083042 bayes_pls_golite062009
helicase activity 1.70242731830224 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 1.67543589693508 bayes_pls_golite062009
protein-DNA loading ATPase activity 1.54436515966471 bayes_pls_golite062009
DNA clamp loader activity 1.51134988628578 bayes_pls_golite062009
RNA helicase activity 1.42791449104435 bayes_pls_golite062009
cytoskeletal protein binding 1.40488517180956 bayes_pls_golite062009
RNA-dependent ATPase activity 1.39335733374328 bayes_pls_golite062009
ATP-dependent RNA helicase activity 1.36724390116598 bayes_pls_golite062009
substrate-specific transporter activity 1.29730375126024 bayes_pls_golite062009
protein transporter activity 1.25342367751911 bayes_pls_golite062009
DNA-dependent ATPase activity 1.2155186842031 bayes_pls_golite062009
purine NTP-dependent helicase activity 1.19311444180077 bayes_pls_golite062009
ATP-dependent helicase activity 1.19311444180077 bayes_pls_golite062009
catalytic activity 1.00104173493322 bayes_pls_golite062009
tubulin binding 0.979946830272106 bayes_pls_golite062009
DNA-directed DNA polymerase activity 0.971476020912368 bayes_pls_golite062009
transcription factor activity 0.959949409533517 bayes_pls_golite062009
purine nucleotide binding 0.929901285538132 bayes_pls_golite062009
DNA polymerase activity 0.928091843881235 bayes_pls_golite062009
nucleotide binding 0.922442819194247 bayes_pls_golite062009
purine ribonucleotide binding 0.920987930180051 bayes_pls_golite062009
ribonucleotide binding 0.920926158369519 bayes_pls_golite062009
microtubule binding 0.907162506177187 bayes_pls_golite062009
actin binding 0.883285269827407 bayes_pls_golite062009
structure-specific DNA binding 0.782430219754236 bayes_pls_golite062009
mRNA binding 0.76699944561918 bayes_pls_golite062009
DNA helicase activity 0.72881469450553 bayes_pls_golite062009
ribonuclease activity 0.712344060953362 bayes_pls_golite062009
general RNA polymerase II transcription factor activity 0.652333406433794 bayes_pls_golite062009
double-stranded DNA binding 0.6071273686445 bayes_pls_golite062009
transcription repressor activity 0.607045223341107 bayes_pls_golite062009
ATP-dependent DNA helicase activity 0.5886142102548 bayes_pls_golite062009
GTPase activity 0.437665353870877 bayes_pls_golite062009
active transmembrane transporter activity 0.434775387083003 bayes_pls_golite062009
snRNA binding 0.418985924846052 bayes_pls_golite062009
ATP binding 0.41092997612902 bayes_pls_golite062009
adenyl ribonucleotide binding 0.385813421701492 bayes_pls_golite062009
adenyl nucleotide binding 0.377870145186619 bayes_pls_golite062009
ion transmembrane transporter activity 0.355466224802969 bayes_pls_golite062009
guanyl nucleotide binding 0.296406132096546 bayes_pls_golite062009
GTP binding 0.295705904888768 bayes_pls_golite062009
primary active transmembrane transporter activity 0.294474570607914 bayes_pls_golite062009
guanyl ribonucleotide binding 0.29028316917561 bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity 0.282352478532746 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances 0.220608508617331 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances 0.219533217661421 bayes_pls_golite062009
ATPase activity, coupled to movement of substances 0.219157471322311 bayes_pls_golite062009
protein binding 0.170837278876362 bayes_pls_golite062009
microfilament motor activity 0.10236059675512 bayes_pls_golite062009
protein transmembrane transporter activity 0.0378638259240902 bayes_pls_golite062009
cation transmembrane transporter activity 0.0254369227200564 bayes_pls_golite062009
signal sequence binding 6.53725193420218E-4 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [264-463]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKQRQTFLFS ATVSDEVRQI CHVALKRDHE FVNCVQEGAG ETHQKVSQMY MIASLDRHFS  60
   61 LLYGLLKKHI TDNVGYKVII FCTTAMVTRL VADLLGKLSL NVREIHSRKP QSYRTRVSDE 120
  121 FRKSKSIILV TSDVSARGVD YPDVSLVVQM GLPSDREQYI HRLGRTGRKG KEGEGVLLLA 180
  181 PWEEYFLSSV KDLPITKSSL 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 7.3
Match: 2p6nA
Description: No description for 2p6nA was found.

Predicted Domain #4
Region A:
Residues: [464-563]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPIDHEAVKK VQKGLIQVEM TNKEAAYQAW LGYYKSQKKI ARDTTRLVEL ANEFSRSMGL  60
   61 SIPPAIPVNI LGKMGLKNVP GIRVAPGFDK KPAKRNYRSR 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.39794
Match: 1c4oA
Description: Nucleotide excision repair enzyme UvrB
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle