YRC Public Data Repository - Protein Structure Prediction

Protein:	DEGP9_ARATH
Organism:	Arabidopsis thaliana
Length:	592 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DEGP9_ARATH.

Description	E-value	Query Range	Subject Range
gi\|78193489, gi\|... - gi\|78222234\|ref\|YP_383981.1\| peptidase S1C, Do [Geobacter metallireducens GS-15], gi\|78193489\|gb\|ABB...	316.0	[0..51]	[566..5]
gi\|26988163, gi\|... - gi\|26988163\|ref\|NP_743588.1\| protease Do [Pseudomonas putida KT2440], gi\|24982897\|gb\|AAN67052.1\|AE01...	301.0	[0..38]	[567..1]
gi\|95112253, gi\|... - gi\|95112253\|emb\|CAK16980.1\| serine protease MucD [Pseudomonas entomophila L48], gi\|104783266\|ref\|YP_... gi\|95112253 - gi\|95112253\|emb\|CAK16980.1\| serine protease MucD [Pseudomonas entomophila L48]	301.0	[0..53]	[567..1]
gi\|221563583, gi... - gi\|222054294\|ref\|YP_002536656.1\| protease Do [Geobacter sp. FRC-32], gi\|221563583\|gb\|ACM19555.1\| pro...	298.0	[0..89]	[564..43]
DEGPL_PSEP1 - Probable periplasmic serine endoprotease DegP-like OS=Pseudomonas putida (strain F1 / ATCC 700007) G...	296.0	[0..53]	[567..1]
gi\|114541032, gi... - gi\|114766775\|ref\|ZP_01445712.1\| periplasmic serine protease, DO/DeqQ family protein [Roseovarius sp....	291.0	[0..55]	[569..13]
gi\|30181051, gi\|... - gi\|30250256\|ref\|NP_842326.1\| mucD; serine protease MucD precursor [Nitrosomonas europaea ATCC 19718]...	291.0	[0..68]	[565..35]
gi\|114308774, gi... - gi\|71550388\|ref\|ZP_00670507.1\| Peptidase S1, chymotrypsin:PDZ/DHR/GLGF [Nitrosomonas eutropha C71], ...	291.0	[0..69]	[567..31]
DEGPL_PSEF5 - Probable periplasmic serine endoprotease DegP-like OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BA...	291.0	[0..53]	[567..1]

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Predicted Domain #1

Region A:
Residues: [1-65]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNSEKRGRK HKRQDASSAE NAGGEVKEAS ANEASLPQSP EPVSASEANP SPSRRSRGRG  60
   61 KKRRL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [66-592]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNESEAGNQR TSSPERSRSR LHHSDTKNGD CSNGMIVSTT TESIPAAPSW ETVVKVVPSM  60
   61 DAVVKVFCVH TEPNFSLPWQ RKRQYSSGSS GFIIGGRRVL TNAHSVEHHT QVKLKKRGSD 120
  121 TKYLATVLAI GTECDIALLT VTDDEFWEGV SPVEFGDLPA LQDAVTVVGY PIGGDTISVT 180
  181 SGVVSRMEIL SYVHGSTELL GLQIDAAINS GNSGGPAFND KGKCVGIAFQ SLKHEDAENI 240
  241 GYVIPTPVIV HFIQDYEKHD KYTGFPVLGI EWQKMENPDL RKSMGMESHQ KGVRIRRIEP 300
  301 TAPESQVLKP SDIILSFDGV NIANDGTVPF RHGERIGFSY LISQKYTGDS ALVKVLRNKE 360
  361 ILEFNIKLAI HKRLIPAHIS GKPPSYFIVA GFVFTTVSVP YLRSEYGKEY EFDAPVKLLE 420
  421 KHLHAMAQSV DEQLVVVSQV LVSDINIGYE EIVNTQVVAF NGKPVKNLKG LAGMVENCED 480
  481 EYMKFNLDYD QIVVLDTKTA KEATLDILTT HCIPSAMSDD LKTEERN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.39794
Match:	1ky9A
Description:	Protease Do (DegP, HtrA), C-terminal domains; Protease Do (DegP, HtrA), catalytic domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits