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View Structure Prediction Details

Protein: gi|20148461, gi|...
Organism: Arabidopsis thaliana
Length: 55 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20148461, gi|....

Description E-value Query
Range
Subject
Range
gi|125587073, gi... - gi|50582698|gb|AAT78768.1| hypothetical protein [Oryza sativa (japonica cultivar-group)], gi|4053897...
99.0 [0..5] [55..94]

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Predicted Domain #1
Region A:
Residues: [1-55]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLFDPWPVF FKREWKRCWP FLTGFAVTGV LITKLTAGLT EEDAKNSKFV QQHRR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.568 a.52.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View Download 0.470 a.190.1 Description not found.
View Download 0.383 a.46.2 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
View Download 0.383 a.46.2 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
View Download 0.368 a.46.2 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
View Download 0.368 a.46.2 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
View Download 0.365 a.46.2 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
View Download 0.365 a.46.2 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
View Download 0.364 a.64.2 Bacteriocin AS-48
View Download 0.348 a.4.5 "Winged helix" DNA-binding domain
View Download 0.347 a.4.5 "Winged helix" DNA-binding domain
View Download 0.313 a.4.5 "Winged helix" DNA-binding domain
View Download 0.231 a.4.5 "Winged helix" DNA-binding domain
View Download 0.218 a.4.5 "Winged helix" DNA-binding domain
View Download 0.217 a.4.5 "Winged helix" DNA-binding domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle