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View Structure Prediction Details

Protein: PPH_ARATH
Organism: Arabidopsis thaliana
Length: 484 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PPH_ARATH.

Description E-value Query
Range
Subject
Range
gi|222635540, gi... - gi|51090866|dbj|BAD35414.1| hydrolase-like [Oryza sativa Japonica Group], gi|252971792|dbj|BAH84761....
248.0 [0..24] [474..33]

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Predicted Domain #1
Region A:
Residues: [1-484]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIISLNVVP QCSVVTWSSK LATKRLVPNR SSLLFSGVKK SRLVIRSGNS DGYVVGENDD  60
   61 LGRIARRGES TSKVLIPGLP DESNGEIAAR ISHSHCEWKP KLRVHYEKAG CDNLDAPAVL 120
  121 FLPGFGVGSF HYEKQLTDLG RDYRVWAIDF LGQGLSLPTE DPTTMTEETS SSEDKEPFWG 180
  181 FGDKTEPWAD QLVFSLDLWR DQVQYFVEEV IGEPVYIAGN SLGGYVALYF AATHPHLVKG 240
  241 VTLLNATPFW GFFPNPVRSP KLARLFPWPG AFPLPERVKK ITELVWQKIS DPESIAEILK 300
  301 QVYTDHSINV DKVFSRIVEV TQHPAAAASF ASIMLAPGGE LSFSEALSRC KENNVQICLM 360
  361 YGREDPWVRP LWGKKIKKEI PNAPYYEISP AGHCPHDEVP EVVNYLMRGW IKHLESGGFE 420
  421 ALPLLEDTEE DWEESRIGRE IEFPRDGWKK AVNLWLYGSN YTYWRGVRES FRSSFIRVFG 480
  481 GKSA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 50.154902
Match: 1s8oA
Description: Human soluble Epoxide Hydrolase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.866238607554457 bayes_pls_golite062009
hydrolase activity 0.52702612560045 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle