YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: AROD5_ARATH
Organism: Arabidopsis thaliana
Length: 425 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AROD5_ARATH.

Description E-value Query
Range
Subject
Range
AROD4_ARATH - Arogenate dehydratase 4, chloroplastic OS=Arabidopsis thaliana GN=ADT4 PE=1 SV=1
439.0 [0..4] [424..1]

Back

Predicted Domain #1
Region A:
Residues: [1-123]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTISPAFSC DLKSVIQPNL TAKKARYSHV NGKRVSVRCS YRSESFSFPN GVGSSRADWQ  60
   61 SSCAILASKV VSAENSSSVA VVNGHSNGSV DLSLVPSKSQ HNGKPGLIQP LTITDLSPAP 120
  121 SHG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.30103
Match: 2d8dA
Description: No description for 2d8dA was found.

Predicted functions:

Term Confidence Notes
chorismate mutase activity 3.78733095924257 bayes_pls_golite062009
catalytic activity 1.09506175640279 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [124-425]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STLRVAYQGV PGAYSEAAAG KAYPNSEAIP CDQFDVAFQA VELWIADRAV LPVENSLGGS  60
   61 IHRNYDLLLR HRLHIVGEVQ IPVHHCLLAL PGVRTDCITR VISHPQALAQ TEGSLNKLTP 120
  121 KAAIEAFHDT AAAAEYIAAN NLHDTAAVAS ARAAELYGLQ ILADGIQDDA GNVTRFLMLA 180
  181 RDPIIPRTDR PFKTSIVFAA QEHKGTSVLF KVLSAFAFRN ISLTKIESRP HQNCPVRVVG 240
  241 DENVGTSKHF EYTFYVDFEA SMAEARAQNA LAEVQEYTSF LRVLGSYPMD MTPWSTLPSE 300
  301 DV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 84.154902
Match: 2qmxA
Description: No description for 2qmxA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle