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View Structure Prediction Details

Protein: REV_ARATH
Organism: Arabidopsis thaliana
Length: 842 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for REV_ARATH.

Predicted Domain #1
Region A:
Residues: [1-102]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMAVANHRE RSSDSMNRHL DSSGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECS  60
   61 ILANIEPKQI KVWFQNRRCR DKQRKEASRL QSVNRKLSAM NK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.39794
Match: 1b72A
Description: Homeobox protein hox-b1
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [103-190]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLMEENDRLQ KQVSQLVCEN GYMKQQLTTV VNDPSCESVV TTPQHSLRDA NSPAGLLSIA  60
   61 EETLAEFLSK ATGTAVDWVQ MPGMKPGP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [191-382]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSVGIFAISQ RCNGVAARAC GLVSLEPMKI AEILKDRPSW FRDCRSLEVF TMFPAGNGGT  60
   61 IELVYMQTYA PTTLAPARDF WTLRYTTSLD NGSFVVCERS LSGSGAGPNA ASASQFVRAE 120
  121 MLSSGYLIRP CDGGGSIIHI VDHLNLEAWS VPDVLRPLYE SSKVVAQKMT ISALRYIRQL 180
  181 AQESNGEVVY GL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.30103
Match: 2psoA
Description: No description for 2psoA was found.

Predicted Domain #4
Region A:
Residues: [383-548]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRQPAVLRTF SQRLSRGFND AVNGFGDDGW STMHCDGAED IIVAINSTKH LNNISNSLSF  60
   61 LGGVLCAKAS MLLQNVPPAV LIRFLREHRS EWADFNVDAY SAATLKAGSF AYPGMRPTRF 120
  121 TGSQIIMPLG HTIEHEEMLE VVRLEGHSLA QEDAFMSRDV HLLQIC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [549-679]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGIDENAVGA CSELIFAPIN EMFPDDAPLV PSGFRVIPVD AKTGDVQDLL TANHRTLDLT  60
   61 SSLEVGPSPE NASGNSFSSS SSRCILTIAF QFPFENNLQE NVAGMACQYV RSVISSVQRV 120
  121 AMAISPSGIS P

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [680-842]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLGSKLSPGS PEAVTLAQWI SQSYSHHLGS ELLTIDSLGS DDSVLKLLWD HQDAILCCSL  60
   61 KPQPVFMFAN QAGLDMLETT LVALQDITLE KIFDESGRKA ICSDFAKLMQ QGFACLPSGI 120
  121 CVSTMGRHVS YEQAVAWKVF AASEENNNNL HCLAFSFVNW SFV

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 90.677781
Match: PF08670.3
Description: No description for PF08670.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle