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View Structure Prediction Details

Protein: gi|14423464, gi|...
Organism: Arabidopsis thaliana
Length: 385 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|14423464, gi|....

Description E-value Query
Range
Subject
Range
gi|110741863, gi... - gi|30696474|ref|NP_849833.1| ATRPAC42; DNA binding / DNA-directed RNA polymerase/ protein dimerizati...
462.0 [0..9] [380..1]

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Predicted Domain #1
Region A:
Residues: [1-385]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTNEVTRIV TDEEKREAKN FNIFDLPDVP TGLPPHLELQ RTRVVCKKDS NIHPTAITFS  60
   61 GAYSSMGVDN SVRLENFSED FKVDVISLTE TDMVFDMIGV HAGIANAFRR ILLAELPSMA 120
  121 IEKVYVANNT SVIQDEVLAH RLGLIPIAAD PRLFEYLSEN DQPNEKNTIV FKLHVKCLKG 180
  181 DPRRKVLTSE LKWLPNGSEL IKESGGSTTT PKTYTSFNHS QDSFPEFAEN PIRPTLKDIL 240
  241 IAKLGPGQEI ELEAHAVKGI GKTHAKWSPV ATAWYRMLPE VVLLKEFEGK HAEELVKVCP 300
  301 KKVFDIEDMG QGRKRATVAR PRDCSLCREC IRDGVEWEDQ VDLRRVKNHF IFTIESTGSQ 360
  361 PPEVLFNEAV KILEDKCERV ISELS

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Detection Method: PSI-BLAST
Confidence: 72.69897
Match: 1i3qC
Description: RPB3
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle