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View Structure Prediction Details

Protein: MSBP1_ARATH
Organism: Arabidopsis thaliana
Length: 220 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSBP1_ARATH.

Description E-value Query
Range
Subject
Range
gi|21555444, gi|... - gi|4960156|gb|AAD34616.1|AF153284_1 putative progesterone-binding protein homolog [Arabidopsis thali...
271.0 [0..1] [220..1]

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Predicted Domain #1
Region A:
Residues: [1-68]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALELWQTLK EAIHAYTGLS PVVFFTALAL AFAIYQVISG WFASPFDDVN RHQRARSLAQ  60
   61 EEEPPIPQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [69-220]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVQVGEITEE ELKQYDGSDP QKPLLMAIKH QIYDVTQSRM FYGPGGPYAL FAGKDASRAL  60
   61 AKMSFEEKDL TWDVSGLGPF ELDALQDWEY KFMSKYAKVG TVKVAGSEPE TASVSEPTEN 120
  121 VEQDAHVTTT PGKTVVDKSD DAPAETVLKK EE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.39794
Match: 1j03A
Description: Solution structure of a putative steroid-binding protein from Arabidopsis
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle