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View Structure Prediction Details

Protein: gi|18405231, gi|...
Organism: Arabidopsis thaliana
Length: 344 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18405231, gi|....

Description E-value Query
Range
Subject
Range
gi|21553677 - gi|21553677|gb|AAM62770.1| unknown [Arabidopsis thaliana]
222.0 [0..1] [344..1]

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Predicted Domain #1
Region A:
Residues: [1-116]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVSVSAPVL SLCYNQSGEL SRSLGYRLPK KVGFSSGRRS VSYIGFGAEK VGRFRVRVPI  60
   61 CRAVPPLLFK DLDADDFRHP FDKQNTLLLR AIPGLNEFGK ALLGSMTEQI MLLENI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [117-344]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTSVLVSKNQ LSDLHGLLVE AAEILNIEAP DLYVRQSPVP NAYTLAISGK KPFIVVHTSL  60
   61 IELLTSAELQ AVLAHELGHL KCDHGVWLTF ANILTLGAYT VPAFGQMIAR TLEEQLLRWL 120
  121 RSAELTCDRA ALLVAQDPKV VVSVLMKLAG GCPSIADQLN VDAFLEQARS YDKASSSPLG 180
  181 WYIRNAQTSQ LSHPLPVLRA REIDEWSRSL EYKSLLKRAN RKSTVQKV

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 20.142668
Match: PF01435.9
Description: No description for PF01435.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle