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View Structure Prediction Details

Protein: gi|20197164, gi|...
Organism: Arabidopsis thaliana
Length: 266 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20197164, gi|....

Description E-value Query
Range
Subject
Range
gi|693922 - gi|693922|gb|AAA80594.1| chlorophyll a/b binding protein
371.0 [0..1] [266..1]

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Predicted Domain #1
Region A:
Residues: [1-266]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASTMALSS PALTGKAVKL SPAASEVFGT GRITMRKASK PTGPSGSPWY GSDRVKYLGP  60
   61 FSGEPPSYLT GEFPGDYGWD TAGLSADPET FARNRELEVI HSRWAMLGAL GCVFPELLAR 120
  121 NGVKFGEAVW FKAGSQIFSD GGLDYLGNPS LVHAQSILAI WATQVILMGA VEGYRVAGDG 180
  181 PLGEAEDLLY PGGSFDPLGL ATDPEAFAEL KVKELKNGRL AMFSMFGFFV QAIVTGKGPL 240
  241 ENLADHLADP VNNNAWAFAT NFVPGK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 90.0
Match: 1vcrA
Description: An icosahedral assembly of light-harvesting chlorophyll a/b protein complex from pea thylakoid membranes
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle